Publications
[DBLP] | [Google Scholar]
2022
- Fries+, Weber+, Seelam+, Altay+, Datta*, Garda*, Kang*, Su*, Kusa*, Cahyawijaya*, Barth*, Ott*, Samwald*, Bach*, Biderman*, Sänger*, et al. (2022). BigBio: A Framework for Data-Centric Biomedical Natural Language Processing in: Conference on Neural Information Processing Systems (NeurIPS), Datasets and Benchmarks Track (accepted) conference +Shared first author, *Shared second author
- Weber, Sänger, Garda, Barth, Alt and Leser. Chemical-Protein Relation Extraction with Ensembles of Carefully Tuned Pretrained Language Models. in: Database, Volume 2022, 2022 [web] [pubmed] [code] journal
2021
- Weber, Sänger, Garda, Barth, Alt and Leser. Humboldt @ DrugProt: Chemical-Protein Relation Extraction with Pretrained Transformers and Entity Descriptions. in: 7th International BioCreative Challenge Evaluation. 2021 [web] [code] [talk] workshop Placed 1st in the BioCreative VII Track 1 (DrugProt) among 30 participating teams
- Weber*, Sänger*, Münchmeyer, Habibi, Leser and Akbik. HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition. in: Bioinformatics. 37.17 (2021), pages 2792-2794. [code] [web] journal *Equal contribution
- Sänger and Leser. Large-scale Entity Representation Learning for Biomedical Relationship Extraction. in: Bioinformatics. 37.2 (2021), pages 236-242. [bib] [web] [pubmed] [code] journal
- Sänger*, Weber*. Leser. WBI at MEDIQA 2021: Summarizing Consumer Health Questions with Generative Transformers in Proceedings of the 20th Workshop on Biomedical Language Processing. 2021, pages 86-95 [pdf] [code] workshop *Equal contribution Placed 2nd in the MEDIQA 2021 shared task (Task 1)
- Kittner, Lamping, Rieke, Götze, Bajwa, Jelas, Rüter, Hautow, Sänger, Habibi, Zettwitz, de Bortoli, Ostermann, Ševa, Starlinger, Kohlbacher, Malek, Keilholz, Leser. Annotation and Initial Evaluation of a Large Annotated German Oncological Corpus in: JAMIA Open. 4(2), 2021, ooab025 [bib] [web] journal
2020
- Weber*, Sänger*, Münchmeyer, Habibi, Leser and Akbik. HunFlair: An Easy-to-Use Tool for State-of-the-Art Biomedical Named Entity Recognition. arXiv. 2020 [bib] [web] [code] arXiv *Equal contribution
2019
- Sänger*, Weber*, Kittner and Leser. Classifying German Animal Experiment Summaries with Multi-lingual BERT at CLEF eHealth 2019 Task 1. in: CLEF eHealth challenge. 2019 [bib] [pdf] [code] workshop *Equal contribution Placed 1st in the CLEF eHealth 2019 challenge (Task 1)
2018
- Seva*, Sänger* and Leser. WBI at CLEF eHealth 2018 Task 1: Language-independent ICD-10 Coding using Multi-lingual Embeddings and Recurrent Neural Networks.. in: CLEF eHealth challenge. 2018 [bib] [pdf] workshop *Equal contribution
2017
- Sänger, Leser and Klinger. Fine-Grained Opinion Mining from Mobile App Reviews with Word Embedding Features. in: NLDB. 2017 [bib] [pdf] conference
2016
- Sänger, Leser, Kemmerer, Adolphs and Klinger. SCARE – The Sentiment Corpus of App Reviews with Fine-grained Annotations in German. in: LREC. 2016 [bib] [pdf] [data] conference
2012